Profil
Profile
Informatics Engineer and Full-stack developper specialized in web techniques, with a strong background in R & D project management, I am competent in IT development, databases administration, or Artificial Intelligence. My skills and experience cover multiple domains as data-scientist, optimization, e-commerce, groth hacking or IT security.
Formation
Education
Generalist Engineer (Master of Science) National Engineering School of Saint-Étienne
Master's Degree - speciality sensorial engineering, 2009
Master of Science in Informatics University of Saint-Étienne
Master's Degree - speciality Web Intelligency, 2014
Master of Science in Information Systems University of Saint-Étienne
Master's Degree - speciality GIS (Geographic Information Systems), 2009
TOEIC
Fluent english (TOEIC Gold : 955 out of 990 pts)
Expériences professionnelles
Work experience
Webmaster & developer since July 2004
[ Internet ] - Full-stack Freelance Developer
Creation, development, SEO and maintenance for personal, professional or business websites and web applications.
PHP (Raw/Prestashop/Wordpress/Drupal/Joomla), Javascript (jQuery/vueJS), MySQL/MariaDB, OVH, Debian, Apache, Google Analytics/Ads/Adsense
Project Manager January 2015 - April 2019
March 2016 - April 2019[ Information Systems Division (ISD) ] - Eovi-Mcd Mutuelle, Saint-Étienne
Development and deployment of web projects (intranet/extranet), coordination with teams within the ISD, provider management, software integration in a mutual insurance company.
Java (SpringBoot), PHP (Raw/Symphony/EZPublish), Javascript (vueJS/jQuery), Oracle, ElasticSearch, Talend, Tomcat
January 2015 - January 2016[ Medical informatics ] - Faculty of Medecine, University of Saint-Étienne
Project management on maximizing revenue from hospital, call for projects, article writing and team management.
PHP Raw, jQuery, SQL Server, MySQL
Research Engineer February 2010 - December 2014
May 2014 - December 2014[ Medical informatics ] - Faculty of Medecine, University of Saint-Étienne
Development and Evaluation of the MIMPS (Minimum Information Model for Patient Safety) for the WHO (World Health Organization), Genova.
PHP (Raw), Javascript (jQuery), MySQL, Protégé, Excel, Word, Powerpoint
January 2013 - April 2014[ Medical informatics ] - INSERM, Paris and University of Saint-Étienne, France
R&D: IT development and set up of several tools for information retrieval, text mining, database administration, language processing techniques. Scientific paper writing and participation in medical informatics conferences.
PHP (Raw), MySQL, Sage, Mathematica, R, Excel, Word, Powerpoint
August 2012 - December 2012[ Medical informatics ] - SSPIM, University of Saint-Étienne
IT development in knowledge engineering, databases administration, statistical data analysis and programming of help coding and text-processing tools.
PHP, MySQL, Protégé, LaTeX
August 2010 - July 2012[ Informatique médicale ] - INSERM, Paris
R&D: IT development and set up of several tools for information retrieval,and signal detection in pharmacovigilance, database administration.
PHP, MySQL, Sage, Mathematica, R, Drools, Excel, Word, Powerpoint
February 2010 - July 2010[ Informatique médicale ] - SSPIM, Université de Saint-Étienne
Ontology development of a patient safety model for WHO and development of tools to help medical coding.
PHP, Protégé, Powerpoint
Compétences
Skills
Langues :
Languages:
- French+++, English+++, Italian++, Spanish+
Informatique :
Computer skills:
- Windows+++, Linux/Unix++
- Internet+++, Réseaux++, Matériel++
- Office: Microsoft Office (Word, Excel, Powerpoint, Access, Publisher)+++, OpenOffice/LibrOffice (Writer, Calc, Impress, Base)+++, Google Drive++, LaTeX+
- Virtualization: VirtualBox++, VmWare+
- Geographic Information System: ArcGIS++, MapInfo++, Google Earth++
- Conception 3D : Catia+++, SolidWorks++, AutoCAD++
- Mathematics: Mathematica+++, R+, Matlab+, Maple++
- Ontology development: Protégé++, OWL (format)+
- Rule-based system: Drools+, RuleML (format)+
- Search Engine: ElasticSearch++, Lucene+
- Graphic & Design: Photoshop++, Paint Shop Pro++, Inkscape+, Gimp+
Programmation/Développement :
IT Development:
- PHP+++, HTML+++, JavaScript+++, jQuery+++, CSS+++, Bootstrap++, VueJS++, APIs (REST/SOAP)++
- Java+++, C++++, OpenGL+, Visual Basic+, Python++, AutoIt++
- Databases: MySQL+++, Access++, SQLServer++, PostGreSQL++, Oracle++
- Web server: Apache+++, nginx+
- IDE: Visual Studio Code++, Eclipse++, PHPStorm++
- Artificial Intelligence: Machine Learning+, TensorFlow+
Internet :
- CMS (Wordpress++, Prestashop++, Drupal+, Joomla+, FluxBB/PunBB+++, EZPublish+, PhpBB+, ...)
- Google & APIs+++ : Analytics+++, Ads++, Adsense+++, Search Console (Webmaster Tools)+++
- Sites & Apps: YouTube+++, eBay+++, LeBonCoin+++, Wikipedia+++, PayPal+++, Slack+, Discord+, etc.
Publications
Articles de revues scientifiques
Papers in scientific journals
[ Medical informatics ]
- Souvignet J., Declerck G., Trombert-Paviot B., Asfari H., Jaulent M-C., Bousquet C. - Semantic Queries Expedite MedDRA Terms Selection Thanks to a Dedicated User Interface: A Pilot Study on Five Medical Conditions, Frontiers in Pharmacology, 2019
- Lardon J., Bellet F., Aboukhamis R., Asfari H., Souvignet J., Jaulent M-C., Beyens M-N., Lillo-LeLouët A., Bousquet C. - Evaluating Twitter as a complementary data source for pharmacovigilance, Expert Opinion on Drug Safety, 2018
- Bousquet C., Dahamna B., Guillemin-Lanne S., Darmoni S., Faviez C., Huot C., Katsahian S., Leroux V., Pereira S., Richard C., Schück S., Souvignet J., Lillo-Le Louët A., Texier N. - The Adverse Drug Reactions from Patient Reports in Social Media Project: Five Major Challenges to Overcome to Operationalize Analysis and Efficiently Support Pharmacovigilance Process, JMIR research protocols, 2017
- Souvignet J., Asfari H., Del Tedesco E, Declerck G, Bousquet C. - MedDRA automated term groupings using OntoADR: evaluation with upper gastrointestinal bleedings., Expert Opinion on Drug Safety, 2016
- Asfari H., Souvignet J., Lillo-Le Louët A., Trombert-Paviot B., Jaulent M-C., Bousquet C. - Automated grouping of terms associated to cardiac valve fibrosis in MedDRA, Therapie, 2016
- Lardon J., Abdellaoui R, Bellet F., Asfari H., Souvignet J., Texier N., Jaulent M-C., Bayens M-N., Burgun A., Bousquet C. - Adverse Drug Reaction Identification and Extraction in Social Media: A Scoping Review, Journal of Medical Internet Research, 2015
- Bousquet C., Sadou E., Souvignet J., Jaulent M-C., Declerck G. - Formalizing Meddra to Support Semantic Reasoning on Adverse Drug Reaction Terms, Journal of Biomedical Informatics, 2014
- Souvignet J., Declerck G., Jaulent M-C., Bousquet C. - Evaluation of Automated Term Groupings for Detecting Upper Gastrointestinal Bleeding Signals for Drugs, Drug Safety 2012; 35 (12): 1195-6
- Bousquet C., Garcelon N, Le Beller C., Wiss-Thébault M., Amardeilh F., Souvignet J., Burgun A., Lillo-Le Louët A. - Building a Database of Articles from PubMed for Documentation of Adverse Drug Reactions Related to Antiretroviral Drugs, Drug Safety 2012; 35 (12): 1198-9
Articles et communication orale pour des congrés scientifiques
Papers and oral communication for scientific congress
[ Medical informatics ]
- Rodrigues J-M., Dhingra-Kumar N., Schulz S., Souvignet J. - A Patient Safety Information Model for Interoperability, MIE 2016
- Souvignet J. Asfari H., Lardon J., Spiga R. and Rodrigues J-M. - Toward a Patient Safety Upper Level Ontology, MIE 2015
- Rodrigues J-M. and Souvignet J. - Integrated care: an Information Model for Patient Safety and Vigilance Reporting Systems, MIE 2015
- Lardon J., Asfari H., Souvignet J. Trombert-Paviot B. and Bousquet C. - Improvement of Diagnosis Coding by Analysing EHR and Using Rule Engine: Application to the Chronic Kidney Disease, MIE 2015
- Souvignet J. and Rodrigues J-M. - Integrated Care: a Common Tool for Quality Management and Vigilance, PCSI 2014
- Souvignet J., Asfari H., Declerck G., Lardon J., Trombert-Paviot B., Jaulent M-C. and Bousquet C. - Ci4SeR - Curation Interface for Semantic Resources - Evaluation with Adverse Drug Reactions, MIE 2014
- Declerck G., Souvignet J., Rodrigues J-M. and Jaulent M-C. - Automatic annotation of ICD-to-MedDRA mappings with SKOS predicates, MIE 2014
- Souvignet J., Bousquet C., Trombert-Paviot B., Rodrigues J-M. - Standardization of Patient Safety Reports Comparison by an International Information Model align with Upper Level Ontologies, CKSE 2013
- Souvignet J., Akiyama M., Rodrigues J-M., Fujita K., Bousquet C., Jin Y. and Lewalle P. - Standardisation d'un modèle international d'information pour la comparaison des déclarations des évènements indésirables, SIG IMIA Francophone 2013
- Souvignet J., Declerck G., Trombert-Paviot B., Rodrigues J-M., Jaulent M-C., Bousquet C. - Evaluation of automated term groupings for detecting anaphylactic shock signals for drugs, AMIA Annu Symp Proc. 2012; 882-90
- Souvignet J., Bousquet C., Trombert-Paviot B., Rodrigues J-M. - Ontology Disambiguation in Healthcare Terminologies, PCSI 2012
- Bousquet C., Declerck G., Souvignet J., Jaulent M-C., Rodrigues J-M. - Method for grouping MedDRA terms related to the same medical condition, PCSI 2012
- Bousquet C., Souvignet J., Merabti T., Sadou E., Trombert-Paviot B., Rodrigues J-M. - Method for mapping the French CCAM terminology to the UMLS metathesaurus, Stud Health Technol Inform. 2012; 180:164-8
- Rodrigues J-M., Schulz S., Bousquet C., Souvignet J. - The CEN ISO Standard Categorial Structure as a Top-Level Set of Constraints for Ontology Disambiguation, ICBO 2012
- Souvignet J., Bousquet C., Lewalle P., Trombert-Paviot B., Rodrigues J-M. - Modeling Patient Safety Incidents Knowledge with the Categorial Structure Method, AMIA Annu Symp Proc. 2011; 1300-8
- Bousquet C., Trombert-Paviot B., Souvignet J., Sadou E., Rodrigues J-M. - Evaluation of the CCAM Hierarchy and Semi Structured Code for Retrieving Relevant Procedures in a Hospital Case Mix Database, AMIA Annu Symp Proc. 2010; 61-5
- Bousquet C., Trombert-Paviot B., Souvignet J., Rodrigues J-M. - Evaluation of the French procedures classification for Medico-Economic Evaluation of Endoscopic Activities in a Hospital, PCSI 2010
[ Geographic Information System ]
- Souvignet J., Chesneau E. - Evaluation automatique des relations sémantiques dans une carte à partir des couleurs de la légende, SAGEO 2009
Workshop pour des congrés scientifiques
Workshop for scientific congress
[ Medical informatics ]
- Koutkias V., Souvignet J., Bousquet C., Yuksel M., Prokosch H-U. and Jaulent M-C. - Leveraging Pharmacovigilance through Knowledge Engineering. MIE 2015
- Rodrigues J-M., Larizgoitia I., Akiyama M., Souvignet J., Hansen J. and Schulz S. - International Information Model for Patient Safety (2IMPS): Enhancing care, patient safety and outcome. MEDINFO 2013
Posters pour des congrés scientifiques
Posters for scientific congress
[ Medical informatics ]
- Souvignet J., Le Hello C., Trombert-Paviot B., Brouard B., Chieh A., Boissier C. - Fetching Connected Pedometer Data to Analyze Patients Walking, STC 2016
- Le Hello C., Brouard B., Trombert-Paviot B., Chieh A., Souvignet J., Boissier C. - Utilisation d'un podomètre connecté dans le ré-entraînement à la marche des patients porteurs d'une artériopathie des membres inférieurs , SFT 2015
- Aljunid S-M., Rodrigues J-M., Best L., Mustaffa H-R., Aljunid S-M-H, Trombert-Paviot B., Souvignet J. and Kim S. - ICHI Categorial Structure: a WHO-FIC Tool for Semantic Interoperability of Procedures Classifications, MEDINFO 2015
- Rodrigues J-M., Schulz S. and Souvignet J. - Information Models Terminology and Ontology: a Toolbox for different use cases, MIE 2014
- Asfari H., Souvignet J., Guy C. and Bousquet C. - Knowledge-based method for automated generation of new MedDRA Grouping for bullous conditions, P2T 2014
- Bousquet C., Declerck G., Souvignet J. and Jaulent M-C. - Knowledge-based method for automated generation of MedDRA Groupings, ISOP 2013
- Bousquet C., Souvignet J., and Bayens M-N. - Bayesian measures of signal detection with Dabigatran in the FDA database, ISOP 2013
- Souvignet J., Bousquet C., Corcho O., Trombert-Paviot B., Rodrigues J-M. - From the categorial structure to the content model ICPS, WHOFIC Network Meeting 2010
Réalisations & Portfolio
Creations & Portfolio
Sites Internet
Web sites
Logiciels & Applications Web
Web apps
Récompences
Nominations and Awards
- Laureate of the French Mathematics Olympiad, 2007
- Winner of the 4th French Championship of Team Fortress 2, 2008
- Second place in the "24 hours of GIS", Paris, 2009
- Prize Winner (ex-aequo) of the mathematical treasure hunt of CIJM, 2009
- Nomination in the 100 best sites "Internet and Science", Sciences et Avenir n°764, 2010
- Nomination for the best original paper by a young researcher - MIE, Madrid, 2015
- Nomination for the best poster - STC, Paris, 2016
- Laureate of Innov'action challenge Eovi-Mcd, 2017
- Laureate of the online treasure hunt "Maths en Scène", category Amateurs, 2021